grouse1CO <- readAceCO('/Paterson/Datafiles/grouse/mapping/grouse1CO.txt')
grouse2CO <- readAceCO('/Paterson/Datafiles/grouse/mapping/grouse2CO.txt')
grouse3CO <- readAceCO('/Paterson/Datafiles/grouse/mapping/grouse3CO.txt')
grouseRefCO <- readAceCO('/Paterson/Datafiles/grouse/mapping/grouseRefCO.txt')

g1contig00515 <- readContigAce(ace.file='/Paterson/Datafiles/grouse/mapping/grouse1.ace',AceCO=grouse1CO,contig='contig00515')
g2contig00515 <- readContigAce(ace.file='/Paterson/Datafiles/grouse/mapping/grouse2.ace',AceCO=grouse2CO,contig='contig00515')
g3contig1007 <- readContigAce(ace.file='/Paterson/Datafiles/grouse/mapping/grouse3.ace',AceCO=grouse3CO,contig='contig01007')
gRefcontig1007 <- readContigAce(ace.file='/Paterson/Datafiles/grouse/mapping/grouseRef.ace',AceCO=grouseRefCO,contig='contig01007')

g1contig00515.ace <- makeAceObject(g1contig00515)
g2contig00515.ace <- makeAceObject(g2contig00515)
g3contig1007.ace <- makeAceObject(g3contig1007)
gRefcontig1007.ace <- makeAceObject(gRefcontig1007)



